Well, it's probably just me but I can't help thinking that's kind of a bass ackwards way. Auto organizing to me implies point the tool at a folder, the tool parses the files and looks for matches. Correctly matched files are moved/renamed, non-matches are left as they are.
Having to give the tool a long list of what to look for removes half of the usefulness.
Anyway, I managed to get MBS auto organize to do pretty much what I want now so back on topic and I'll shut up.