I have set up a folder to cover media to a mobile format and place the files in the Original media folder, next to original files, I have selected the check box for "Automatically download new content" so that when I add moved they will be converted.   I have a folder running that is 90+ movies long, after each movie is done converting it then says transferring (even when there is no transfer step to occur, I'm only converting not downloading).   Then upon the next run of "Cloud & folder